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I've only ever seen a ninja once or twice while playing MTG, but am very curious as to the potential. Here's my first attempt. Comments welcome.
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NNNNNNNIIIIIIIINJJJJJJJJAAAAAAAAAAAAAASSSSSSSSSSSSSSSS!!!!!! XD
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Training grounds doesn't work with ninjutsu. Also, depending on your group's tolerance for non-tribal creatures, ornithopter and will-o'-the-wisp would be nice adds.